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Research Article | 23-May-2019

IMPLEMENTATION OF WHOLE GENOME SEQUENCING FOR BACTERIA GENOTYPING

molecular microbiology, thus providing modern tools for the identification of sources and routes of infection. Whole genome sequencing and other high-throughput typing methods are becoming increasingly popular and, thanks to their high resolution, they are ideal tools for comparative analysis of bacteria. This study reviews the methods most commonly used in the molecular typing of bacteria, including those which are in the development stage and may be the main tool in microbial typing in the future.

Daria Artyszuk, Tomasz Wołkowicz

Postępy Mikrobiologii - Advancements of Microbiology, Volume 57 , ISSUE 2, 179–193

short-communication | 17-September-2021

Discovery and Full Genome Characterization of SARS-CoV-2 in Stool Specimen from a Recovered Patient, China

circulate in humans by qRT-PCR is difficult. Here, genome sequencing was applied to profile the genome sequence of the virus in the samples from different dates of symptom onset. The full genome sequences from two samples before and after recovery were identical to one another, indicating that direct evidence was identified genetically supporting the existence of the move of the virus from the respiratory tract into the gastrointestinal tract in the recovered patient, which may discharge the stool with

YONGDONG LI, YI CHEN, HONGXIA NI, BO YI, DANDAN ZHANG, JIANING ZHANG, WENJING WANG, YUHUI LIU, SULI JIAO, GUOZHANG XU, WEIDONG QIAN

Polish Journal of Microbiology, Volume 70 , ISSUE 3, 401–404

short-communication | 18-February-2020

Sub-lethal Concentrations of Phytochemicals (Carvacrol and Oregano) Select for Reduced Susceptibility Mutants of Escherichia coli O23:H52

AFNAN A. AL-MNASER, MARTIN J. WOODWARD

Polish Journal of Microbiology, Volume 69 , ISSUE 1, 121–125

Research Article

THE APPLICATION OF GENOTYPING AND PHENOTYPING TECHNIQUES FOR EPIDEMIOLOGICAL ANALYSIS OF MICROORGANISMS

. This review discusses and compares methods facilitating bacterial typing at a strain level. Phenotyping methods analysed in this article are: Biotyping, Antimicrobial Susceptibility Typing, Phage Typing and protein-based methods. Genotyping techniques reviewed in this article are based on digestion of genomic DNA, methods using amplification of DNA, and based on sequencing DNA. This would include Multilocus Sequence Typing (MLST) and Whole Genome Sequencing (WGS). Methods used in identification of

Marcin Brzozowski, Paweł Kwiatkowski, Joanna Jursa-Kulesza, Danuta Kosik-Bogacka

Postępy Mikrobiologii - Advancements of Microbiology, Volume 56 , ISSUE 3, 353–366

Article | 24-March-2021

NOVEL SARS-COV-2 PANDEMIC TRANSMISSION WITH ONGOING ANTIVIRAL THERAPIES AND VACCINE DESIGN

Muhammad Yameen, Sara Sattar, Ayesha Khalid, Muhammad Aamir Aslam, Nishat Zafar, Muhammad Hassan Saeed, Muhammad Haseeb Arif, Muhammad Jahangeer, Azka Qadeer, Shoukat Hussain, Muhammad Aamir, Sania Mukhtar, Huma Nasir, Asif Shahzad

Postępy Mikrobiologii - Advancements of Microbiology, Volume 60 , ISSUE 1, 13–20

research-article | 30-November-2020

Reclaimed desert habitats favor entomopathogenic nematode and microarthropod abundance compared to ancient farmlands in the Nile Basin

Alexandros Dritsoulas, Fahiem E. El-Borai, Ibrahim E. Shehata, Mostafa M. Hammam, Ramadan M. El-Ashry, Moawad M. Mohamed, Mahfouz M. Abd-Elgawad, Larry W. Duncan

Journal of Nematology, Volume 53 , 1–13

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